Preprints

• Yilmaz, S., Yorgancioglu, K., & Koyuturk, M. (2022). Are under-studied proteins under-represented? How to fairly evaluate link prediction algorithms in network biology. biorXiv Preprint.

Publications

- Systems Biology/Bioinformatics

• Yılmaz S., Ayati M., Schlatzer, Çiçek A. E., Chance M. R., Koyutürk M. (2021) Robust inference of kinase activity using functional networks. Nature Communications, 12 (1117). Download PDF, View Short Summary
  • Conference Version: RECOMB 2021 (Best Paper Award)
• Yilmaz, S., Fakhouri, M., Koyuturk, M., Cicek, A. E. and Tastan, O. (2021). Uncovering complementary sets of variants for predicting quantitative phenotypes. Bioinformatics. Download PDF
• Yilmaz, S., Tastan, O., & Cicek, E. (2019) Spadis: An algorithm for selecting predictive and diverse snps in GWAS. IEEE/ACM transactions on computational biology and bioinformatics. Download PDF
• Ayati, M., Yilmaz, S., Lopes P., Chance M. R., Koyutürk M. (2022). Prediction of Kinase-Substrate Associations Using The Functional Landscape of Kinases and Phosphorylation Sites. Pacific Symposium on Biocomputing. Download PDF
• Ayati, M., Yilmaz, S., Chance M. R., Koyutürk M. (2021). Functional characterization of co-phosphorylation networks. Bioinformatics, 38(15), 3785-3793. Download PDF

- Digital Health/Intimate Partner Violence

• Yilmaz, S., Gunay, E., Lee, D. H., Whiting, K., Silver, K., Koyuturk, M., & Karakurt, G. (2023). Adverse Health Correlates of Intimate Partner Violence against Older Women: Mining Electronic Health Records. PLoS one.
• Yılmaz, S., Alghamdi, B., Singuri, S., Hacialiefendioglu, A. M., Özcan, T., Koyutürk, M., & Karakurt, G. (2020). Identifying health correlates of intimate partner violence against pregnant women. Health Information Science and Systems.
  View Full Text
• Karakurt G., Yılmaz S., Kumari M., Gao K., Koyuturk M. (2023). Comprehensive analysis of electronic health records to characterize the association between intimate partner violence and mental health. AMIA Informatics Summit. Download PDF
• Hacialiefendioglu, A. M., Yilmaz, S. S., D Smith, J Whiting , Koyuturk, M. & Karakurt, G. (2021). Data driven identification of subtypes of intimate partner violence. Scientific Reports.
• Hacialiefendioglu, A. M., Yılmaz, S., Koyutürk, M., & Karakurt, G. (2020). Co-occurrence Patterns of Intimate Partner Violence. Proceedings of the Pacific Symposium on Biocomputing 2021, pp. 79-90. Download PDF