| Software | Description | Platform |
| LoQuM |
A machine learning based tool for calibrating the quality of mappings
provided by short read alignment algorithms. |
Java |
| SEAL |
Simulation of next generation sequencing and evaluation of short read alignment algorithms. |
Java |
| VAVIEN |
Topological similarity based prioritization of candidate disease genes |
Web Service |
| DaDa |
Network proximity based prioritization of candidate disease genes |
Matlab |
| COKGEN |
Identification of copy number variation from SNP microarrays |
R |
| Narada |
Identification of significantly over-represented regulatory pathways
with respect to Gene Ontology annotations |
Java |
| Mule |
Identification of conserved subgraphs on biological networks |
C |
| SiDeS |
Identification of significantly dense subgraphs in a network of
interactions |
C, Java |
| MaWISh |
Identification of conserved subgraphs on biological networks |
C |
| Proximus |
An algebraic framework for analyzing very high dimensional
discrete-attributed datasets. |
C |
